IL_8P9A_417

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

8P9A|1|sR|A|865
8P9A|1|sR|G|866
*
8P9A|1|sR|C|962
8P9A|1|sR|A|963
8P9A|1|sR|U|964
8P9A|1|sR|U|965

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain c3

40S ribosomal protein S13

Chain d2

40S ribosomal protein S22-A

Chain d7

40S ribosomal protein S27-A