IL_8P9A_424

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

8P9A|1|sR|C|990
8P9A|1|sR|G|991
8P9A|1|sR|A|992
8P9A|1|sR|A|993
8P9A|1|sR|G|994
*
8P9A|1|sR|C|1010
8P9A|1|sR|G|1011
8P9A|1|sR|U|1012
8P9A|1|sR|A|1013
8P9A|1|sR|G|1014

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain AR

Large subunit ribosomal RNA; LSU rRNA

Chain CD

60S ribosomal protein L2-A

Chain c4

40S ribosomal protein S14-B

Chain d6

Small ribosomal subunit protein eS26B