IL_8P9A_469

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAA*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P9A_469 not in the Motif Atlas

Geometric match to IL_1Z7F_002

Geometric discrepancy: 0.2529

The information below is about IL_1Z7F_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

8P9A|1|sR|C|1222
8P9A|1|sR|A|1223
8P9A|1|sR|A|1224
*
8P9A|1|sR|U|1259
8P9A|1|sR|U|1260
8P9A|1|sR|G|1261

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain c0

40S ribosomal protein S10-A