IL_8PEG_017

3D structure

PDB id

8PEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (queueing 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8PEG|1|7|G|801, 8PEG|1|7|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PEG_017 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0784

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8PEG|1|7|G|674
8PEG|1|7|A|675
8PEG|1|7|A|676
8PEG|1|7|A|677
8PEG|1|7|C|678
*
8PEG|1|7|G|799
8PEG|1|7|A|800
8PEG|1|7|G|801
8PEG|1|7|A|802
8PEG|1|7|U|803
8PEG|1|7|A|804
8PEG|1|7|G|805
8PEG|1|7|C|806

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain o

50S ribosomal protein L15