IL_8PEG_089

3D structure

PDB id

8PEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (queueing 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

8PEG|1|7|U|2118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PEG_089 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.5829

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

8PEG|1|7|G|2110
8PEG|1|7|U|2111
8PEG|1|7|G|2112
8PEG|1|7|U|2113
8PEG|1|7|A|2114
8PEG|1|7|G|2115
8PEG|1|7|G|2116
8PEG|1|7|A|2117
8PEG|1|7|U|2118
8PEG|1|7|A|2119
8PEG|1|7|G|2120
*
8PEG|1|7|C|2178
8PEG|1|7|C|2179

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain X

Transfer RNA; tRNA

Chain a

Large ribosomal subunit protein uL1