IL_8PEG_165

3D structure

PDB id

8PEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (queueing 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

8PEG|1|A|C|1200, 8PEG|1|A|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PEG_165 not in the Motif Atlas

Homologous match to IL_4LFB_045

Geometric discrepancy: 0.0966

The information below is about IL_4LFB_045

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_24264.1

Basepair signature

cWW-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

8PEG|1|A|G|1057
8PEG|1|A|G|1058
*
8PEG|1|A|U|1199
8PEG|1|A|C|1200
8PEG|1|A|A|1201
8PEG|1|A|U|1202
8PEG|1|A|C|1203

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain C

Small ribosomal subunit protein uS3

Chain J

30S ribosomal protein S10

Chain N

Small ribosomal subunit protein uS14