IL_8PFQ_002
3D structure
- PDB id
- 8PFQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNA structure with 1-methylpseudoridine, P1 space group
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 1.01 Å
Loop
- Sequence
- AA(B8H)U*AA(B8H)U
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PFQ_002 not in the Motif Atlas
- Geometric match to IL_1D4R_001
- Geometric discrepancy: 0.1678
- The information below is about IL_1D4R_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
8PFQ|1|A|A|5
8PFQ|1|A|A|6
8PFQ|1|A|B8H|7
8PFQ|1|A|U|8
*
8PFQ|1|B|A|25
8PFQ|1|B|A|26
8PFQ|1|B|B8H|27
8PFQ|1|B|U|28
Current chains
- Chain A
- Chains: A,B
- Chain B
- Chains: A,B
Nearby chains
No other chains within 10ÅColoring options: