IL_8PFR_024

3D structure

PDB id

8PFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39L integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GGGG*UGCAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PFR_024 not in the Motif Atlas

Homologous match to IL_5TBW_023

Geometric discrepancy: 0.0647

The information below is about IL_5TBW_023

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_07235.3

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8PFR|1|A|G|725
8PFR|1|A|G|726
8PFR|1|A|G|727
8PFR|1|A|G|728
*
8PFR|1|A|U|741
8PFR|1|A|G|742
8PFR|1|A|C|743
8PFR|1|A|A|744
8PFR|1|A|C|745

Current chains

Chain A

25S rRNA

Nearby chains

Chain QP

60S ribosomal protein L18-A

Chain RB

60S ribosomal protein L29