IL_8PFR_054
3D structure
- PDB id
- 8PFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mouse RPL39L integrated into the yeast 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 8PFR|1|A|C|1196, 8PFR|1|A|A|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PFR_054 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.0463
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8PFR|1|A|G|1194
8PFR|1|A|A|1195
8PFR|1|A|C|1196
8PFR|1|A|A|1197
8PFR|1|A|C|1198
8PFR|1|A|C|1199
8PFR|1|A|A|1200
8PFR|1|A|C|1201
8PFR|1|A|A|1202
8PFR|1|A|A|1203
8PFR|1|A|A|1204
8PFR|1|A|A|1205
*
8PFR|1|A|U|1299
8PFR|1|A|G|1300
8PFR|1|A|A|1301
8PFR|1|A|A|1302
8PFR|1|A|A|1303
8PFR|1|A|A|1304
8PFR|1|A|U|1305
8PFR|1|A|G|1306
8PFR|1|A|G|1307
8PFR|1|A|A|1308
8PFR|1|A|U|1309
8PFR|1|A|G|1310
8PFR|1|A|G|1311
8PFR|1|A|C|1312
8PFR|1|A|G|1313
8PFR|1|A|C|1314
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain JW
- 60S ribosomal protein L16-A
- Chain LE
- 5S ribosomal RNA; 5S rRNA
- Chain LG
- 60S ribosomal protein L3
- Chain LK
- 60S ribosomal protein L7-A
- Chain LN
- 60S ribosomal protein L10
- Chain RF
- 60S ribosomal protein L33-A
- Chain RO
- Ubiquitin-60S ribosomal protein L40
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