IL_8PFR_071

3D structure

PDB id

8PFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39L integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

UUAUCA*UCUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PFR_071 not in the Motif Atlas

Homologous match to IL_5TBW_072

Geometric discrepancy: 0.092

The information below is about IL_5TBW_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_39753.2

Basepair signature

cWW-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8PFR|1|A|U|1702
8PFR|1|A|U|1703
8PFR|1|A|A|1704
8PFR|1|A|U|1705
8PFR|1|A|C|1706
8PFR|1|A|A|1707
*
8PFR|1|A|U|1737
8PFR|1|A|C|1738
8PFR|1|A|U|1739
8PFR|1|A|U|1740
8PFR|1|A|A|1741
8PFR|1|A|U|1742
8PFR|1|A|G|1743

Current chains

Chain A

25S rRNA

Nearby chains

Chain RG

60S ribosomal protein L34-A