IL_8PFR_089

3D structure

PDB id

8PFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39L integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

8PFR|1|A|A|2281, 8PFR|1|A|C|2287, 8PFR|1|A|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PFR_089 not in the Motif Atlas

Homologous match to IL_5TBW_090

Geometric discrepancy: 0.0556

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8PFR|1|A|C|2277
8PFR|1|A|C|2278
8PFR|1|A|A|2279
8PFR|1|A|A|2280
8PFR|1|A|A|2281
8PFR|1|A|U|2282
8PFR|1|A|G|2283
8PFR|1|A|C|2284
8PFR|1|A|C|2285
8PFR|1|A|U|2286
8PFR|1|A|C|2287
8PFR|1|A|G|2288
*
8PFR|1|A|C|2304
8PFR|1|A|G|2305
8PFR|1|A|C|2306
8PFR|1|A|G|2307

Current chains

Chain A

25S rRNA

Nearby chains