IL_8PHJ_012

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8PHJ|1|A|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PHJ_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.0949

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8PHJ|1|A|G|147
8PHJ|1|A|G|148
8PHJ|1|A|A|149
8PHJ|1|A|U|150
8PHJ|1|A|A|151
8PHJ|1|A|A|152
8PHJ|1|A|C|153
*
8PHJ|1|A|G|168
8PHJ|1|A|C|169
8PHJ|1|A|U|170
8PHJ|1|A|A|171
8PHJ|1|A|A|172
8PHJ|1|A|U|173
8PHJ|1|A|A|174
8PHJ|1|A|C|175

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20