IL_8PHJ_058

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

GU(5MC)AC*GAAGUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PHJ_058 not in the Motif Atlas

Homologous match to IL_5J7L_060

Geometric discrepancy: 0.1316

The information below is about IL_5J7L_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PHJ|1|A|G|1405
8PHJ|1|A|U|1406
8PHJ|1|A|5MC|1407
8PHJ|1|A|A|1408
8PHJ|1|A|C|1409
*
8PHJ|1|A|G|1491
8PHJ|1|A|A|1492
8PHJ|1|A|A|1493
8PHJ|1|A|G|1494
8PHJ|1|A|U|1495
8PHJ|1|A|C|1496

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12

Chain X

CRISPR-associated protein, APE2256 family

Chain a

Large subunit ribosomal RNA; LSU rRNA