IL_8PHJ_079

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8PHJ|1|a|G|801, 8PHJ|1|a|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PHJ_079 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.085

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8PHJ|1|a|G|674
8PHJ|1|a|A|675
8PHJ|1|a|A|676
8PHJ|1|a|A|677
8PHJ|1|a|C|678
*
8PHJ|1|a|G|799
8PHJ|1|a|A|800
8PHJ|1|a|G|801
8PHJ|1|a|A|802
8PHJ|1|a|U|803
8PHJ|1|a|A|804
8PHJ|1|a|G|805
8PHJ|1|a|C|806

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain k

Large ribosomal subunit protein uL15