IL_8PHJ_082

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PHJ_082 not in the Motif Atlas

Geometric match to IL_5J7L_263

Geometric discrepancy: 0.0664

The information below is about IL_5J7L_263

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8PHJ|1|a|U|703
8PHJ|1|a|G|704
8PHJ|1|a|A|705
8PHJ|1|a|A|706
8PHJ|1|a|G|707
*
8PHJ|1|a|U|724
8PHJ|1|a|G|725
8PHJ|1|a|G|726
8PHJ|1|a|A|727
8PHJ|1|a|G|728

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain c

Large ribosomal subunit protein uL2