IL_8PHJ_084

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

8PHJ|1|a|G|776, 8PHJ|1|a|A|788, 8PHJ|1|a|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PHJ_084 not in the Motif Atlas

Geometric match to IL_5J7L_265

Geometric discrepancy: 0.1019

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

8PHJ|1|a|G|775
8PHJ|1|a|G|776
8PHJ|1|a|G|777
*
8PHJ|1|a|C|787
8PHJ|1|a|A|788
8PHJ|1|a|A|789
8PHJ|1|a|U|790
8PHJ|1|a|C|791

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain c

Large ribosomal subunit protein uL2

Chain r

Large ribosomal subunit protein uL22