IL_8PHJ_107

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8PHJ|1|a|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PHJ_107 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0615

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8PHJ|1|a|C|1208
8PHJ|1|a|U|1209
8PHJ|1|a|G|1210
8PHJ|1|a|C|1211
8PHJ|1|a|G|1212
8PHJ|1|a|A|1213
8PHJ|1|a|A|1214
8PHJ|1|a|G|1215
*
8PHJ|1|a|U|1234
8PHJ|1|a|G|1235
8PHJ|1|a|G|1236
8PHJ|1|a|A|1237
8PHJ|1|a|G|1238

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain p

Large ribosomal subunit protein bL20