IL_8PHJ_118

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

UAAG*UGAUG

Length

9 nucleotides

Bulged bases

8PHJ|1|a|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PHJ_118 not in the Motif Atlas

Homologous match to IL_5J7L_299

Geometric discrepancy: 0.0821

The information below is about IL_5J7L_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8PHJ|1|a|U|1468
8PHJ|1|a|A|1469
8PHJ|1|a|A|1470
8PHJ|1|a|G|1471
*
8PHJ|1|a|U|1520
8PHJ|1|a|G|1521
8PHJ|1|a|A|1522
8PHJ|1|a|U|1523
8PHJ|1|a|G|1524

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains