IL_8PHJ_132
3D structure
- PDB id
- 8PHJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cA4-bound Cami1 in complex with 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.67 Å
Loop
- Sequence
- CCGG*CG
- Length
- 6 nucleotides
- Bulged bases
- 8PHJ|1|a|C|1838
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PHJ_132 not in the Motif Atlas
- Homologous match to IL_5J7L_314
- Geometric discrepancy: 0.1069
- The information below is about IL_5J7L_314
- Detailed Annotation
- Minor groove platform, major groove intercalation
- Broad Annotation
- Minor groove platform, major groove intercalation
- Motif group
- IL_95583.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
8PHJ|1|a|C|1837
8PHJ|1|a|C|1838
8PHJ|1|a|G|1839
8PHJ|1|a|G|1840
*
8PHJ|1|a|C|1902
8PHJ|1|a|G|1903
Current chains
- Chain a
- 23S rRNA (2862-MER)
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain c
- Large ribosomal subunit protein uL2
Coloring options: