IL_8PHJ_160

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

GAAC*G(PSU)(PSU)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PHJ_160 not in the Motif Atlas

Homologous match to IL_5J7L_343

Geometric discrepancy: 0.0949

The information below is about IL_5J7L_343

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PHJ|1|a|G|2588
8PHJ|1|a|A|2589
8PHJ|1|a|A|2590
8PHJ|1|a|C|2591
*
8PHJ|1|a|G|2603
8PHJ|1|a|PSU|2604
8PHJ|1|a|PSU|2605
8PHJ|1|a|C|2606

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain 7

Transfer RNA; tRNA

Chain c

Large ribosomal subunit protein uL2