IL_8PHJ_183

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PHJ_183 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0705

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8PHJ|1|a|U|1851
8PHJ|1|a|U|1852
8PHJ|1|a|A|1853
8PHJ|1|a|A|1854
8PHJ|1|a|U|1855
8PHJ|1|a|U|1856
8PHJ|1|a|G|1857
8PHJ|1|a|A|1858
8PHJ|1|a|U|1859
8PHJ|1|a|G|1860
*
8PHJ|1|a|U|1882
8PHJ|1|a|U|1883
8PHJ|1|a|G|1884
8PHJ|1|a|A|1885
8PHJ|1|a|U|1886
8PHJ|1|a|C|1887
8PHJ|1|a|G|1888
8PHJ|1|a|A|1889
8PHJ|1|a|A|1890
8PHJ|1|a|G|1891

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain 8

Transfer RNA; tRNA