IL_8PJ1_008
3D structure
- PDB id
- 8PJ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex in open codon scanning state (48S-1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UACGCA*UGAAA
- Length
- 11 nucleotides
- Bulged bases
- 8PJ1|1|A|C|65, 8PJ1|1|A|C|67
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PJ1_008 not in the Motif Atlas
- Homologous match to IL_4V88_390
- Geometric discrepancy: 0.1781
- The information below is about IL_4V88_390
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_87517.1
- Basepair signature
- cWW-L-R-L-R-tHS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8PJ1|1|A|U|63
8PJ1|1|A|A|64
8PJ1|1|A|C|65
8PJ1|1|A|G|66
8PJ1|1|A|C|67
8PJ1|1|A|A|68
*
8PJ1|1|A|U|81
8PJ1|1|A|G|82
8PJ1|1|A|A|83
8PJ1|1|A|A|84
8PJ1|1|A|A|85
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain S
- 40S ribosomal protein S6
- Chain T
- 40S ribosomal protein S24
Coloring options: