IL_8PJ1_047
3D structure
- PDB id
- 8PJ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex in open codon scanning state (48S-1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GAAAAAA(5MU)U*ACCGCAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PJ1_047 not in the Motif Atlas
- Geometric match to IL_4V88_425
- Geometric discrepancy: 0.2659
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8PJ1|1|A|G|807
8PJ1|1|A|A|808
8PJ1|1|A|A|809
8PJ1|1|A|A|810
8PJ1|1|A|A|811
8PJ1|1|A|A|812
8PJ1|1|A|A|813
8PJ1|1|A|5MU|814
8PJ1|1|A|U|815
*
8PJ1|1|A|A|849
8PJ1|1|A|C|850
8PJ1|1|A|C|851
8PJ1|1|A|G|852
8PJ1|1|A|C|853
8PJ1|1|A|A|854
8PJ1|1|A|G|855
8PJ1|1|A|C|856
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain B
- 40S ribosomal protein S11
- Chain C
- 40S ribosomal protein S4, X isoform
- Chain D
- 40S ribosomal protein S9
- Chain J
- 40S ribosomal protein S15a
Coloring options: