IL_8PJ1_057

3D structure

PDB id

8PJ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex in open codon scanning state (48S-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

8PJ1|1|A|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PJ1_057 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.1743

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

8PJ1|1|A|G|952
8PJ1|1|A|C|953
8PJ1|1|A|U|954
8PJ1|1|A|A|955
8PJ1|1|A|G|956
*
8PJ1|1|A|C|967
8PJ1|1|A|U|968
8PJ1|1|A|U|969
8PJ1|1|A|G|970
8PJ1|1|A|G|971
8PJ1|1|A|A|972
8PJ1|1|A|C|973
8PJ1|1|A|C|974

Current chains

Chain A

18S rRNA

Nearby chains

Chain O

40S ribosomal protein S3a

Chain P

40S ribosomal protein S14