IL_8PJ1_081
3D structure
- PDB id
- 8PJ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex in open codon scanning state (48S-1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- ACUA*UUCU
- Length
- 8 nucleotides
- Bulged bases
- 8PJ1|1|A|C|1403, 8PJ1|1|A|U|1404
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PJ1_081 not in the Motif Atlas
- Homologous match to IL_4V88_456
- Geometric discrepancy: 0.1713
- The information below is about IL_4V88_456
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_76458.1
- Basepair signature
- cWW-cSH-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8PJ1|1|A|A|1402
8PJ1|1|A|C|1403
8PJ1|1|A|U|1404
8PJ1|1|A|A|1405
*
8PJ1|1|A|U|1441
8PJ1|1|A|U|1442
8PJ1|1|A|C|1443
8PJ1|1|A|U|1444
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain Y
- 40S ribosomal protein S16
- Chain Z
- 40S ribosomal protein S3
- Chain c
- Receptor of activated protein C kinase 1
- Chain h
- 40S ribosomal protein S20
Coloring options: