IL_8PJ1_101
3D structure
- PDB id
- 8PJ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex in open codon scanning state (48S-1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGAUAAC*GCUAAUA(OMC)
- Length
- 15 nucleotides
- Bulged bases
- 8PJ1|1|A|U|172
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PJ1_101 not in the Motif Atlas
- Homologous match to IL_8C3A_402
- Geometric discrepancy: 0.0811
- The information below is about IL_8C3A_402
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.4
- Basepair signature
- cWW-L-R-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
8PJ1|1|A|G|145
8PJ1|1|A|G|146
8PJ1|1|A|A|147
8PJ1|1|A|U|148
8PJ1|1|A|A|149
8PJ1|1|A|A|150
8PJ1|1|A|C|151
*
8PJ1|1|A|G|167
8PJ1|1|A|C|168
8PJ1|1|A|U|169
8PJ1|1|A|A|170
8PJ1|1|A|A|171
8PJ1|1|A|U|172
8PJ1|1|A|A|173
8PJ1|1|A|OMC|174
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain S
- 40S ribosomal protein S6
- Chain T
- 40S ribosomal protein S24
Coloring options: