IL_8PJ2_039

3D structure

PDB id

8PJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex in AUG recognition state after eIF5-induced GTP hydrolysis by eIF2 (48S-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCU*A(A2M)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PJ2_039 not in the Motif Atlas

Homologous match to IL_8C3A_427

Geometric discrepancy: 0.0919

The information below is about IL_8C3A_427

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

8PJ2|1|A|G|673
8PJ2|1|A|C|674
8PJ2|1|A|U|675
*
8PJ2|1|A|A|1030
8PJ2|1|A|A2M|1031
8PJ2|1|A|C|1032

Current chains

Chain A

18S rRNA

Nearby chains

Chain I

40S ribosomal protein S13

Chain y

Eukaryotic translation initiation factor 3 subunit C