IL_8PJ2_060
3D structure
- PDB id
- 8PJ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex in AUG recognition state after eIF5-induced GTP hydrolysis by eIF2 (48S-2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGAU*GCAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PJ2_060 not in the Motif Atlas
- Geometric match to IL_4V88_438
- Geometric discrepancy: 0.1289
- The information below is about IL_4V88_438
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
8PJ2|1|A|C|1098
8PJ2|1|A|G|1099
8PJ2|1|A|A|1100
8PJ2|1|A|U|1101
*
8PJ2|1|A|G|1131
8PJ2|1|A|C|1132
8PJ2|1|A|A|1133
8PJ2|1|A|G|1134
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain I
- 40S ribosomal protein S13
- Chain M
- 40S ribosomal protein S17
- Chain N
- 40S ribosomal protein SA
- Chain O
- 40S ribosomal protein S3a
- Chain Q
- 40S ribosomal protein S26
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