IL_8PJ2_078

3D structure

PDB id

8PJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex in AUG recognition state after eIF5-induced GTP hydrolysis by eIF2 (48S-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGG*C(5MC)G

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PJ2_078 not in the Motif Atlas

Geometric match to IL_7RQB_031

Geometric discrepancy: 0.3141

The information below is about IL_7RQB_031

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_46796.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

8PJ2|1|A|C|1363
8PJ2|1|A|U|1364
8PJ2|1|A|G|1365
8PJ2|1|A|G|1366
*
8PJ2|1|A|C|1373
8PJ2|1|A|5MC|1374
8PJ2|1|A|G|1375

Current chains

Chain A

18S rRNA

Nearby chains

Chain M

40S ribosomal protein S17

Chain Q

40S ribosomal protein S26