IL_8PJ2_090
3D structure
- PDB id
- 8PJ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex in AUG recognition state after eIF5-induced GTP hydrolysis by eIF2 (48S-2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- 8PJ2|1|A|A|1825
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PJ2_090 not in the Motif Atlas
- Geometric match to IL_5J7L_033
- Geometric discrepancy: 0.3721
- The information below is about IL_5J7L_033
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
8PJ2|1|A|C|1708
8PJ2|1|A|G|1709
8PJ2|1|A|C|1710
8PJ2|1|A|U|1711
*
8PJ2|1|A|A|1822
8PJ2|1|A|A|1823
8PJ2|1|A|A|1824
8PJ2|1|A|A|1825
8PJ2|1|A|G|1826
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain 7
- mRNA
- Chain 9
- 60S ribosomal protein L41
- Chain E
- 40S ribosomal protein S23
- Chain b
- 40S ribosomal protein S15
- Chain q
- Eukaryotic translation initiation factor 1A, X-chromosomal
- Chain z
- Eukaryotic translation initiation factor 5
Coloring options: