IL_8PJ2_095

3D structure

PDB id

8PJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex in AUG recognition state after eIF5-induced GTP hydrolysis by eIF2 (48S-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAG*CGAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PJ2_095 not in the Motif Atlas

Homologous match to IL_4V88_471

Geometric discrepancy: 0.1254

The information below is about IL_4V88_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8PJ2|1|A|U|1733
8PJ2|1|A|G|1734
8PJ2|1|A|A|1735
8PJ2|1|A|G|1736
*
8PJ2|1|A|C|1798
8PJ2|1|A|G|1799
8PJ2|1|A|A|1800
8PJ2|1|A|A|1801

Current chains

Chain A

18S rRNA

Nearby chains

Chain R

40S ribosomal protein S8

Chain S

40S ribosomal protein S6