IL_8PJ3_029

3D structure

PDB id

8PJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex upon transfer of initiator tRNA to eIF5B (48S-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAAU*AUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PJ3_029 not in the Motif Atlas

Geometric match to IL_4P3T_002

Geometric discrepancy: 0.3816

The information below is about IL_4P3T_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01472.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

8PJ3|1|A|C|527
8PJ3|1|A|A|528
8PJ3|1|A|A|529
8PJ3|1|A|U|530
*
8PJ3|1|A|A|555
8PJ3|1|A|U|556
8PJ3|1|A|U|557
8PJ3|1|A|G|558

Current chains

Chain A

18S rRNA

Nearby chains

Chain 1

Eukaryotic translation initiation factor 3 subunit B

Chain D

40S ribosomal protein S9

Chain F

Small ribosomal subunit protein eS30