IL_8PJ3_068
3D structure
- PDB id
- 8PJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex upon transfer of initiator tRNA to eIF5B (48S-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GG*CAC
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PJ3_068 not in the Motif Atlas
- Homologous match to IL_8C3A_451
- Geometric discrepancy: 0.1178
- The information below is about IL_8C3A_451
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_92540.1
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 32
Unit IDs
8PJ3|1|A|G|1235
8PJ3|1|A|G|1236
*
8PJ3|1|A|C|1521
8PJ3|1|A|A|1522
8PJ3|1|A|C|1523
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain b
- 40S ribosomal protein S15
- Chain e
- 40S ribosomal protein S25
- Chain f
- 40S ribosomal protein S18
- Chain q
- Eukaryotic translation initiation factor 1A, X-chromosomal
- Chain w
- Transfer RNA; tRNA
Coloring options: