IL_8PJ3_106

3D structure

PDB id

8PJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex upon transfer of initiator tRNA to eIF5B (48S-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGA*UUUU

Length

7 nucleotides

Bulged bases

8PJ3|1|A|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PJ3_106 not in the Motif Atlas

Homologous match to IL_8P9A_418

Geometric discrepancy: 0.4314

The information below is about IL_8P9A_418

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

8PJ3|1|A|G|924
8PJ3|1|A|G|925
8PJ3|1|A|A|926
*
8PJ3|1|A|U|1015
8PJ3|1|A|U|1016
8PJ3|1|A|U|1017
8PJ3|1|A|U|1018

Current chains

Chain A

18S rRNA

Nearby chains

Chain H

40S ribosomal protein S27

Chain I

40S ribosomal protein S13

Chain J

40S ribosomal protein S15a