IL_8PJ4_034
3D structure
- PDB id
- 8PJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex after eIF5 release (48S-4)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PJ4_034 not in the Motif Atlas
- Homologous match to IL_8C3A_423
- Geometric discrepancy: 0.0965
- The information below is about IL_8C3A_423
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.2
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
8PJ4|1|A|A|599
8PJ4|1|A|G|600
8PJ4|1|A|G|601
8PJ4|1|A|G|602
8PJ4|1|A|C|603
8PJ4|1|A|A|604
8PJ4|1|A|A|605
8PJ4|1|A|G|606
*
8PJ4|1|A|C|636
8PJ4|1|A|U|637
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain 7
- mRNA
- Chain D
- 40S ribosomal protein S9
- Chain F
- Small ribosomal subunit protein eS30
- Chain L
- 40S ribosomal protein S2
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