IL_8PJ4_049

3D structure

PDB id

8PJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex after eIF5 release (48S-4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PJ4_049 not in the Motif Atlas

Homologous match to IL_4V88_427

Geometric discrepancy: 0.2403

The information below is about IL_4V88_427

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

8PJ4|1|A|C|879
8PJ4|1|A|G|880
8PJ4|1|A|G|881
*
8PJ4|1|A|C|905
8PJ4|1|A|U|906
8PJ4|1|A|G|907

Current chains

Chain A

18S rRNA

Nearby chains

Chain B

40S ribosomal protein S11