IL_8PJ4_052
3D structure
- PDB id
- 8PJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex after eIF5 release (48S-4)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAC*GUUU
- Length
- 7 nucleotides
- Bulged bases
- 8PJ4|1|A|U|1016
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PJ4_052 not in the Motif Atlas
- Geometric match to IL_3R1C_018
- Geometric discrepancy: 0.251
- The information below is about IL_3R1C_018
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10892.2
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 58
Unit IDs
8PJ4|1|A|G|925
8PJ4|1|A|A|926
8PJ4|1|A|C|927
*
8PJ4|1|A|G|1014
8PJ4|1|A|U|1015
8PJ4|1|A|U|1016
8PJ4|1|A|U|1017
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain H
- 40S ribosomal protein S27
- Chain I
- 40S ribosomal protein S13
- Chain J
- 40S ribosomal protein S15a
- Chain y
- Eukaryotic translation initiation factor 3 subunit C
Coloring options: