IL_8PJ4_056
3D structure
- PDB id
- 8PJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex after eIF5 release (48S-4)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCUAG*CUUGGACC
- Length
- 13 nucleotides
- Bulged bases
- 8PJ4|1|A|G|970
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PJ4_056 not in the Motif Atlas
- Homologous match to IL_4V88_434
- Geometric discrepancy: 0.1443
- The information below is about IL_4V88_434
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
8PJ4|1|A|G|952
8PJ4|1|A|C|953
8PJ4|1|A|U|954
8PJ4|1|A|A|955
8PJ4|1|A|G|956
*
8PJ4|1|A|C|967
8PJ4|1|A|U|968
8PJ4|1|A|U|969
8PJ4|1|A|G|970
8PJ4|1|A|G|971
8PJ4|1|A|A|972
8PJ4|1|A|C|973
8PJ4|1|A|C|974
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain O
- 40S ribosomal protein S3a
- Chain P
- 40S ribosomal protein S14
- Chain r
- Eukaryotic translation initiation factor 2 subunit 1
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