IL_8PJ4_109
3D structure
- PDB id
- 8PJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex after eIF5 release (48S-4)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGCC*GAAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PJ4_109 not in the Motif Atlas
- Homologous match to IL_8P9A_419
- Geometric discrepancy: 0.1151
- The information below is about IL_8P9A_419
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
8PJ4|1|A|G|928
8PJ4|1|A|G|929
8PJ4|1|A|C|930
8PJ4|1|A|C|931
*
8PJ4|1|A|G|1010
8PJ4|1|A|A|1011
8PJ4|1|A|A|1012
8PJ4|1|A|U|1013
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain H
- 40S ribosomal protein S27
- Chain I
- 40S ribosomal protein S13
- Chain O
- 40S ribosomal protein S3a
- Chain y
- Eukaryotic translation initiation factor 3 subunit C
Coloring options: