IL_8PJ5_035

3D structure

PDB id

8PJ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex after eIF2 release prior 60S subunit joining (48S-5)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

8PJ5|1|A|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PJ5_035 not in the Motif Atlas

Homologous match to IL_8C3A_424

Geometric discrepancy: 0.2386

The information below is about IL_8C3A_424

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

94

Unit IDs

8PJ5|1|A|G|606
8PJ5|1|A|U|607
8PJ5|1|A|C|608
*
8PJ5|1|A|G|635
8PJ5|1|A|C|636

Current chains

Chain A

18S rRNA

Nearby chains

Chain 7

mRNA

Chain D

40S ribosomal protein S9

Chain F

40S ribosomal protein S30

Chain Z

40S ribosomal protein S3