IL_8PJ5_040
3D structure
- PDB id
- 8PJ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex after eIF2 release prior 60S subunit joining (48S-5)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PJ5_040 not in the Motif Atlas
- Homologous match to IL_8C3A_428
- Geometric discrepancy: 0.0748
- The information below is about IL_8C3A_428
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.5
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
8PJ5|1|A|C|676
8PJ5|1|A|G|677
8PJ5|1|A|U|678
8PJ5|1|A|A|679
8PJ5|1|A|G|680
*
8PJ5|1|A|U|1025
8PJ5|1|A|C|1026
8PJ5|1|A|A|1027
8PJ5|1|A|A|1028
8PJ5|1|A|G|1029
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain B
- 40S ribosomal protein S11
- Chain E
- 40S ribosomal protein S23
- Chain I
- 40S ribosomal protein S13
- Chain J
- 40S ribosomal protein S15a
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