IL_8PJ5_061

3D structure

PDB id

8PJ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex after eIF2 release prior 60S subunit joining (48S-5)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PJ5_061 not in the Motif Atlas

Geometric match to IL_4E59_001

Geometric discrepancy: 0.1431

The information below is about IL_4E59_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8PJ5|1|A|U|1101
8PJ5|1|A|G|1102
8PJ5|1|A|C|1103
*
8PJ5|1|A|G|1129
8PJ5|1|A|G|1130
8PJ5|1|A|G|1131

Current chains

Chain A

18S rRNA

Nearby chains

Chain H

40S ribosomal protein S27

Chain I

40S ribosomal protein S13

Chain M

40S ribosomal protein S17

Chain O

40S ribosomal protein S3a

Chain Q

40S ribosomal protein S26