IL_8PJ5_079
3D structure
- PDB id
- 8PJ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex after eIF2 release prior 60S subunit joining (48S-5)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAUGC*GAGG
- Length
- 9 nucleotides
- Bulged bases
- 8PJ5|1|A|U|1397
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PJ5_079 not in the Motif Atlas
- Homologous match to IL_8C3A_461
- Geometric discrepancy: 0.5716
- The information below is about IL_8C3A_461
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_13404.1
- Basepair signature
- cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R
- Number of instances in this motif group
- 10
Unit IDs
8PJ5|1|A|C|1395
8PJ5|1|A|A|1396
8PJ5|1|A|U|1397
8PJ5|1|A|G|1398
8PJ5|1|A|C|1399
*
8PJ5|1|A|G|1447
8PJ5|1|A|A|1448
8PJ5|1|A|G|1449
8PJ5|1|A|G|1450
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain M
- 40S ribosomal protein S17
- Chain Y
- 40S ribosomal protein S16
- Chain c
- Receptor of activated protein C kinase 1
- Chain h
- 40S ribosomal protein S20
Coloring options: