IL_8PJ5_081

3D structure

PDB id

8PJ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex after eIF2 release prior 60S subunit joining (48S-5)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UA*UCCCCCA

Length

9 nucleotides

Bulged bases

8PJ5|1|A|C|1434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PJ5_081 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.2183

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

8PJ5|1|A|U|1408
8PJ5|1|A|A|1409
*
8PJ5|1|A|U|1432
8PJ5|1|A|C|1433
8PJ5|1|A|C|1434
8PJ5|1|A|C|1435
8PJ5|1|A|C|1436
8PJ5|1|A|C|1437
8PJ5|1|A|A|1438

Current chains

Chain A

18S rRNA

Nearby chains

Chain Y

40S ribosomal protein S16

Chain h

40S ribosomal protein S20