IL_8PJ6_041

3D structure

PDB id

8PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex with initiator tRNA, eIF1A and eIF3 (off-pathway)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAG*CGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PJ6_041 not in the Motif Atlas

Geometric match to IL_4WF9_020

Geometric discrepancy: 0.2877

The information below is about IL_4WF9_020

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8PJ6|1|A|G|692
8PJ6|1|A|A|693
8PJ6|1|A|G|694
*
8PJ6|1|A|C|736
8PJ6|1|A|G|737
8PJ6|1|A|C|738

Current chains

Chain A

18S rRNA

Nearby chains

Chain J

40S ribosomal protein S15a