IL_8PJ6_053

3D structure

PDB id

8PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex with initiator tRNA, eIF1A and eIF3 (off-pathway)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PJ6_053 not in the Motif Atlas

Homologous match to IL_8C3A_439

Geometric discrepancy: 0.1084

The information below is about IL_8C3A_439

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

8PJ6|1|A|G|942
8PJ6|1|A|U|943
8PJ6|1|A|A|944
8PJ6|1|A|U|945
*
8PJ6|1|A|A|981
8PJ6|1|A|G|982
8PJ6|1|A|A|983
8PJ6|1|A|C|984

Current chains

Chain A

18S rRNA

Nearby chains

Chain O

40S ribosomal protein S3a

Chain P

40S ribosomal protein S14