IL_8PJ6_076

3D structure

PDB id

8PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex with initiator tRNA, eIF1A and eIF3 (off-pathway)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGG*C(5MC)G

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PJ6_076 not in the Motif Atlas

Geometric match to IL_5J7L_006

Geometric discrepancy: 0.3249

The information below is about IL_5J7L_006

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_90351.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

8PJ6|1|A|C|1363
8PJ6|1|A|U|1364
8PJ6|1|A|G|1365
8PJ6|1|A|G|1366
*
8PJ6|1|A|C|1373
8PJ6|1|A|5MC|1374
8PJ6|1|A|G|1375

Current chains

Chain A

18S rRNA

Nearby chains

Chain M

40S ribosomal protein S17

Chain Q

40S ribosomal protein S26