IL_8PJ6_086
3D structure
- PDB id
- 8PJ6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex with initiator tRNA, eIF1A and eIF3 (off-pathway)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- G(OMC)CC*G(UR3)A(6MZ)C
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC, UR3, 6MZ
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PJ6_086 not in the Motif Atlas
- Homologous match to IL_8C3A_471
- Geometric discrepancy: 0.0925
- The information below is about IL_8C3A_471
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.2
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8PJ6|1|A|G|1702
8PJ6|1|A|OMC|1703
8PJ6|1|A|C|1704
8PJ6|1|A|C|1705
*
8PJ6|1|A|G|1829
8PJ6|1|A|UR3|1830
8PJ6|1|A|A|1831
8PJ6|1|A|6MZ|1832
8PJ6|1|A|C|1833
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain 7
- mRNA
- Chain 9
- 60S ribosomal protein L41
- Chain b
- 40S ribosomal protein S15
- Chain q
- Eukaryotic translation initiation factor 1A, X-chromosomal
- Chain w
- Transfer RNA; tRNA
Coloring options: