IL_8PK0_008

3D structure

PDB id

8PK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human mitoribosomal large subunit assembly intermediate 1 with GTPBP10-GTPBP7

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GAAAC*GUGAUAGC

Length

13 nucleotides

Bulged bases

8PK0|1|A|G|2011, 8PK0|1|A|G|2015

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PK0_008 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.1407

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8PK0|1|A|G|1906
8PK0|1|A|A|1907
8PK0|1|A|A|1908
8PK0|1|A|A|1909
8PK0|1|A|C|1910
*
8PK0|1|A|G|2009
8PK0|1|A|U|2010
8PK0|1|A|G|2011
8PK0|1|A|A|2012
8PK0|1|A|U|2013
8PK0|1|A|A|2014
8PK0|1|A|G|2015
8PK0|1|A|C|2016

Current chains

Chain A

16S rRNA + pre-H68-71 segment

Nearby chains

Chain F

39S ribosomal protein L4, mitochondrial

Chain M

39S ribosomal protein L15, mitochondrial

Chain i

39S ribosomal protein L51, mitochondrial