IL_8PK0_035

3D structure

PDB id

8PK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human mitoribosomal large subunit assembly intermediate 1 with GTPBP10-GTPBP7

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

AUC*GUGAU

Length

8 nucleotides

Bulged bases

8PK0|1|A|G|3094, 8PK0|1|A|A|3095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PK0_035 not in the Motif Atlas

Geometric match to IL_4WF9_095

Geometric discrepancy: 0.1628

The information below is about IL_4WF9_095

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

8PK0|1|A|A|3028
8PK0|1|A|U|3029
8PK0|1|A|C|3030
*
8PK0|1|A|G|3092
8PK0|1|A|U|3093
8PK0|1|A|G|3094
8PK0|1|A|A|3095
8PK0|1|A|U|3096

Current chains

Chain A

16S rRNA + pre-H68-71 segment

Nearby chains

Chain 0

39S ribosomal protein L32, mitochondrial

Chain E

39S ribosomal protein L3, mitochondrial